PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010916993.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 350aa    MW: 37370.5 Da    PI: 9.9677
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010916993.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH41.42.4e-13199225127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ykte+Cr + + G+C+yG++C++aHg+
  XP_010916993.1 199 YKTEICRSWEELGFCRYGSKCQYAHGK 225
                     9************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.9E-17196229IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-9198225IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.08E-10198229IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.028198226IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-10199225IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MTERIVYMNV GSSTGIDQTP SSGGSGSWHS FSPLNSSATR LRRFSSPTAN AFLTPAFNAC  60
AANPKSTGSP DVDPSLLRYT RPRLPLSASS SSASNSPDPH STARKRLHRL LYLRSSLSTL  120
SSSSPLSPIQ NLPAATARSP TLYKTPVKVE MEEDVLVMDG VLVPDSESGR PRSSVSEFGS  180
TGSPSSSSSA NNGGSSSLYK TEICRSWEEL GFCRYGSKCQ YAHGKEELRG TRNMRQRSEA  240
GGQSGRSVAI AGSYVYRNRF RYPPSASSSS ASAVGWTTGA IVAPAAKATT MTAEVGSTGV  300
AASTVSPRRS SSEPSFIWPP TPEEEAYINQ VLYGPSQRRR LPVFREICPE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010916993.10.0PREDICTED: zinc finger protein 36, C3H1 type-like 1
RefseqXP_010916994.10.0PREDICTED: zinc finger protein 36, C3H1 type-like 1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2944533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.16e-08C3H family protein